PLINK v1.90p 64-bit (16 Aug 2016)
Options in effect:
  --file 100accs_samtools_hc_allchr_merged_ready
  --make-bed
  --out 100accs_samtools_hc_allchr_merged_ready

Hostname: a00738.science.domain
Working directory: /science/groupdirs/fnr909/SCIENCE-PLEN-TRANS-SecretoryPathwayPumps/Davide_I/QUINOA_GWAS/data/5_VCFs/100accs_samtools_chromosomes
Start time: Mon Oct 16 23:50:51 2023

Random number seed: 1697493051
515761 MB RAM detected; reserving 257880 MB for main workspace.
Scanning .ped file... done.
Performing single-pass .bed write (3637746 variants, 100 people).
--file: 100accs_samtools_hc_allchr_merged_ready-temporary.bed +
100accs_samtools_hc_allchr_merged_ready-temporary.bim +
100accs_samtools_hc_allchr_merged_ready-temporary.fam written.
3637746 variants loaded from .bim file.
100 people (0 males, 0 females, 100 ambiguous) loaded from .fam.
Ambiguous sex IDs written to 100accs_samtools_hc_allchr_merged_ready.nosex .
Using 1 thread (no multithreaded calculations invoked).
Before main variant filters, 100 founders and 0 nonfounders present.
Calculating allele frequencies... done.
3637746 variants and 100 people pass filters and QC.
Note: No phenotypes present.
--make-bed to 100accs_samtools_hc_allchr_merged_ready.bed +
100accs_samtools_hc_allchr_merged_ready.bim +
100accs_samtools_hc_allchr_merged_ready.fam ... done.

End time: Mon Oct 16 23:51:36 2023