This is cutadapt 1.11 with Python 2.7.12 Command line parameters: --discard-untrimmed --minimum-length 100 -g CGTGCG -e 0 -O 6 - Trimming 1 adapter with at most 0.0% errors in single-end mode ... Finished in 89.59 s (26 us/read; 2.32 M reads/minute). === Summary === Total reads processed: 3,465,239 Reads with adapters: 323,793 (9.3%) Reads that were too short: 296,411 (8.6%) Reads written (passing filters): 27,382 (0.8%) Total basepairs processed: 1,043,036,939 bp Total written (filtered): 6,492,796 bp (0.6%) === Adapter 1 === Sequence: CGTGCG; Type: regular 5'; Length: 6; Trimmed: 323793 times. No. of allowed errors: 0-6 bp: 0 Overview of removed sequences length count expect max.err error counts 6 117 846.0 0 117 7 6616 846.0 0 6616 8 69 846.0 0 69 9 23 846.0 0 23 10 23 846.0 0 23 11 29 846.0 0 29 12 22 846.0 0 22 13 22 846.0 0 22 14 36 846.0 0 36 15 25 846.0 0 25 16 26 846.0 0 26 17 31 846.0 0 31 18 41 846.0 0 41 19 33 846.0 0 33 20 132 846.0 0 132 21 36 846.0 0 36 22 21 846.0 0 21 23 16 846.0 0 16 24 26 846.0 0 26 25 26 846.0 0 26 26 32 846.0 0 32 27 30 846.0 0 30 28 40 846.0 0 40 29 31 846.0 0 31 30 28 846.0 0 28 31 29 846.0 0 29 32 12 846.0 0 12 33 25 846.0 0 25 34 17 846.0 0 17 35 32 846.0 0 32 36 28 846.0 0 28 37 329 846.0 0 329 38 35 846.0 0 35 39 17 846.0 0 17 40 19 846.0 0 19 41 27 846.0 0 27 42 42 846.0 0 42 43 21 846.0 0 21 44 28 846.0 0 28 45 17 846.0 0 17 46 23 846.0 0 23 47 33 846.0 0 33 48 48 846.0 0 48 49 26 846.0 0 26 50 686 846.0 0 686 51 52 846.0 0 52 52 33 846.0 0 33 53 21 846.0 0 21 54 59 846.0 0 59 55 134 846.0 0 134 56 103 846.0 0 103 57 63 846.0 0 63 58 39 846.0 0 39 59 55 846.0 0 55 60 117 846.0 0 117 61 107 846.0 0 107 62 169 846.0 0 169 63 44 846.0 0 44 64 71 846.0 0 71 65 87 846.0 0 87 66 98 846.0 0 98 67 58 846.0 0 58 68 107 846.0 0 107 69 52 846.0 0 52 70 72 846.0 0 72 71 57 846.0 0 57 72 71 846.0 0 71 73 117 846.0 0 117 74 207 846.0 0 207 75 6657 846.0 0 6657 76 2879 846.0 0 2879 77 3174 846.0 0 3174 78 42 846.0 0 42 79 28 846.0 0 28 80 49 846.0 0 49 81 23 846.0 0 23 82 17 846.0 0 17 83 17 846.0 0 17 84 19 846.0 0 19 85 13 846.0 0 13 86 14 846.0 0 14 87 15 846.0 0 15 88 31 846.0 0 31 89 22 846.0 0 22 90 28 846.0 0 28 91 31 846.0 0 31 92 17 846.0 0 17 93 22 846.0 0 22 94 24 846.0 0 24 95 35 846.0 0 35 96 26 846.0 0 26 97 11 846.0 0 11 98 28 846.0 0 28 99 21 846.0 0 21 100 12 846.0 0 12 101 20 846.0 0 20 102 21 846.0 0 21 103 24 846.0 0 24 104 30 846.0 0 30 105 16 846.0 0 16 106 22 846.0 0 22 107 11 846.0 0 11 108 18 846.0 0 18 109 24 846.0 0 24 110 25 846.0 0 25 111 10 846.0 0 10 112 9 846.0 0 9 113 17 846.0 0 17 114 19 846.0 0 19 115 20 846.0 0 20 116 24 846.0 0 24 117 18 846.0 0 18 118 28 846.0 0 28 119 21 846.0 0 21 120 23 846.0 0 23 121 17 846.0 0 17 122 15 846.0 0 15 123 28 846.0 0 28 124 18 846.0 0 18 125 18 846.0 0 18 126 77 846.0 0 77 127 109 846.0 0 109 128 97 846.0 0 97 129 84 846.0 0 84 130 23 846.0 0 23 131 21 846.0 0 21 132 29 846.0 0 29 133 124 846.0 0 124 134 17 846.0 0 17 135 27 846.0 0 27 136 33 846.0 0 33 137 46 846.0 0 46 138 32 846.0 0 32 139 20 846.0 0 20 140 31 846.0 0 31 141 12 846.0 0 12 142 13 846.0 0 13 143 34 846.0 0 34 144 19 846.0 0 19 145 14 846.0 0 14 146 32 846.0 0 32 147 24 846.0 0 24 148 17 846.0 0 17 149 12 846.0 0 12 150 26 846.0 0 26 151 9 846.0 0 9 152 16 846.0 0 16 153 17 846.0 0 17 154 18 846.0 0 18 155 21 846.0 0 21 156 23 846.0 0 23 157 23 846.0 0 23 158 25 846.0 0 25 159 18 846.0 0 18 160 15 846.0 0 15 161 43 846.0 0 43 162 22 846.0 0 22 163 22 846.0 0 22 164 36 846.0 0 36 165 40 846.0 0 40 166 34 846.0 0 34 167 39 846.0 0 39 168 33 846.0 0 33 169 26 846.0 0 26 170 31 846.0 0 31 171 20 846.0 0 20 172 25 846.0 0 25 173 25 846.0 0 25 174 23 846.0 0 23 175 24 846.0 0 24 176 18 846.0 0 18 177 12 846.0 0 12 178 19 846.0 0 19 179 21 846.0 0 21 180 44 846.0 0 44 181 37 846.0 0 37 182 30 846.0 0 30 183 33 846.0 0 33 184 21 846.0 0 21 185 25 846.0 0 25 186 42 846.0 0 42 187 25 846.0 0 25 188 40 846.0 0 40 189 31 846.0 0 31 190 31 846.0 0 31 191 30 846.0 0 30 192 28 846.0 0 28 193 36 846.0 0 36 194 49 846.0 0 49 195 52 846.0 0 52 196 49 846.0 0 49 197 58 846.0 0 58 198 40 846.0 0 40 199 92 846.0 0 92 200 35 846.0 0 35 201 114 846.0 0 114 202 154 846.0 0 154 203 64 846.0 0 64 204 79 846.0 0 79 205 69 846.0 0 69 206 50 846.0 0 50 207 35 846.0 0 35 208 34 846.0 0 34 209 38 846.0 0 38 210 38 846.0 0 38 211 274 846.0 0 274 212 54 846.0 0 54 213 65 846.0 0 65 214 66 846.0 0 66 215 41 846.0 0 41 216 21 846.0 0 21 217 253 846.0 0 253 218 85 846.0 0 85 219 92 846.0 0 92 220 122 846.0 0 122 221 274 846.0 0 274 222 87 846.0 0 87 223 235 846.0 0 235 224 283 846.0 0 283 225 477 846.0 0 477 226 105 846.0 0 105 227 85 846.0 0 85 228 134 846.0 0 134 229 78 846.0 0 78 230 103 846.0 0 103 231 182 846.0 0 182 232 294 846.0 0 294 233 739 846.0 0 739 234 1007 846.0 0 1007 235 1466 846.0 0 1466 236 1832 846.0 0 1832 237 1602 846.0 0 1602 238 21491 846.0 0 21491 239 182036 846.0 0 182036 240 6886 846.0 0 6886 241 325 846.0 0 325 242 424 846.0 0 424 243 204 846.0 0 204 244 252 846.0 0 252 245 378 846.0 0 378 246 505 846.0 0 505 247 1541 846.0 0 1541 248 40686 846.0 0 40686 249 15752 846.0 0 15752 250 6686 846.0 0 6686 251 3834 846.0 0 3834 252 31 846.0 0 31 253 12 846.0 0 12 254 23 846.0 0 23 255 19 846.0 0 19 256 21 846.0 0 21 257 10 846.0 0 10 258 67 846.0 0 67 259 96 846.0 0 96 260 26 846.0 0 26 261 91 846.0 0 91 262 13 846.0 0 13 263 17 846.0 0 17 264 67 846.0 0 67 265 13 846.0 0 13 266 23 846.0 0 23 267 12 846.0 0 12 268 27 846.0 0 27 269 24 846.0 0 24 270 13 846.0 0 13 271 22 846.0 0 22 272 26 846.0 0 26 273 26 846.0 0 26 274 24 846.0 0 24 275 20 846.0 0 20 276 24 846.0 0 24 277 25 846.0 0 25 278 55 846.0 0 55 279 76 846.0 0 76 280 103 846.0 0 103 281 90 846.0 0 90 282 998 846.0 0 998 283 342 846.0 0 342 284 1127 846.0 0 1127 285 55 846.0 0 55 286 39 846.0 0 39 287 36 846.0 0 36 288 30 846.0 0 30 289 9 846.0 0 9 290 19 846.0 0 19 291 17 846.0 0 17 292 19 846.0 0 19 293 18 846.0 0 18 294 28 846.0 0 28 295 169 846.0 0 169 296 195 846.0 0 195 297 130 846.0 0 130 298 17 846.0 0 17 299 244 846.0 0 244 300 82 846.0 0 82 301 124 846.0 0 124 Finished in 1.18 s (43 us/read; 1.39 M reads/minute). === Summary === Total reads processed: 27,382 Reads with adapters: 6,692 (24.4%) Reads that were too short: 10 (0.0%) Reads written (passing filters): 6,682 (24.4%) Total basepairs processed: 6,492,796 bp Total written (filtered): 1,840,873 bp (28.4%) === Adapter 1 === Sequence: CCTAYGGGRBGCASCAG; Type: regular 5'; Length: 17; Trimmed: 6692 times. No. of allowed errors: 0-4 bp: 0; 5-9 bp: 1; 10-14 bp: 2; 15-17 bp: 3 Overview of removed sequences length count expect max.err error counts 15 6 0.0 3 0 0 6 16 42 0.0 3 0 41 0 1 17 6522 0.0 3 6449 73 18 30 0.0 3 2 15 11 2 19 6 0.0 3 2 0 1 3 20 6 0.0 3 0 0 0 6 25 1 0.0 3 0 0 0 1 40 1 0.0 3 0 0 0 1 61 1 0.0 3 0 0 0 1 67 1 0.0 3 0 0 0 1 75 18 0.0 3 0 0 0 18 76 1 0.0 3 0 0 0 1 82 1 0.0 3 0 0 0 1 84 1 0.0 3 0 0 0 1 91 6 0.0 3 0 0 0 6 92 1 0.0 3 0 0 0 1 93 2 0.0 3 0 0 0 2 94 1 0.0 3 0 0 0 1 95 1 0.0 3 0 0 0 1 96 2 0.0 3 0 0 0 2 98 7 0.0 3 0 0 0 7 99 1 0.0 3 0 0 0 1 101 1 0.0 3 0 0 0 1 109 4 0.0 3 0 0 0 4 111 1 0.0 3 0 0 0 1 112 1 0.0 3 0 0 0 1 116 8 0.0 3 0 0 0 8 118 1 0.0 3 0 0 0 1 119 6 0.0 3 0 0 0 6 134 1 0.0 3 0 0 0 1 141 1 0.0 3 0 0 0 1 147 1 0.0 3 0 0 0 1 159 1 0.0 3 0 0 0 1 167 1 0.0 3 0 0 0 1 177 1 0.0 3 0 0 0 1 180 1 0.0 3 0 0 0 1 215 1 0.0 3 0 0 0 1 218 3 0.0 3 0 0 0 3 244 1 0.0 3 0 1 This is cutadapt 1.11 with Python 2.7.12 Command line parameters: -a taatctatgggnncatcagg - Trimming 1 adapter with at most 10.0% errors in single-end mode ... Finished in 0.24 s (36 us/read; 1.67 M reads/minute). === Summary === Total reads processed: 6,682 Reads with adapters: 585 (8.8%) Reads written (passing filters): 6,682 (100.0%) Total basepairs processed: 1,840,873 bp Total written (filtered): 1,839,117 bp (99.9%) === Adapter 1 === Sequence: TAATCTATGGGNNCATCAGG; Type: regular 3'; Length: 20; Trimmed: 585 times. No. of allowed errors: 0-9 bp: 0; 10-19 bp: 1; 20 bp: 2 Bases preceding removed adapters: A: 4.4% C: 90.8% G: 4.4% T: 0.3% none/other: 0.0% WARNING: The adapter is preceded by "C" extremely often. The provided adapter sequence may be incomplete. To fix the problem, add "C" to the beginning of the adapter sequence. Overview of removed sequences length count expect max.err error counts 3 584 104.4 0 584 4 1 26.1 0 1 WARNING: One or more of your adapter sequences may be incomplete. Please see the detailed output above.