This is cutadapt 1.11 with Python 2.7.12 Command line parameters: --discard-untrimmed --minimum-length 100 -g CACTCT -e 0 -O 6 - Trimming 1 adapter with at most 0.0% errors in single-end mode ... This is cutadapt 1.11 with Python 2.7.12 Command line parameters: --discard-untrimmed --minimum-length 100 -g ggactacnngggtatctaat -e 0.2 -O 20 - Trimming 1 adapter with at most 20.0% errors in single-end mode ... Finished in 166.25 s (48 us/read; 1.25 M reads/minute). === Summary === Total reads processed: 3,470,393 Reads with adapters: 416,063 (12.0%) Reads that were too short: 27,543 (0.8%) Reads written (passing filters): 388,520 (11.2%) Total basepairs processed: 1,044,588,293 bp Total written (filtered): 68,424,654 bp (6.6%) === Adapter 1 === Sequence: CACTCT; Type: regular 5'; Length: 6; Trimmed: 416063 times. No. of allowed errors: 0-6 bp: 0 Overview of removed sequences length count expect max.err error counts 6 2085 847.3 0 2085 7 29023 847.3 0 29023 8 602 847.3 0 602 9 37582 847.3 0 37582 10 78 847.3 0 78 11 48 847.3 0 48 12 46 847.3 0 46 13 33 847.3 0 33 14 67 847.3 0 67 15 28 847.3 0 28 16 43 847.3 0 43 17 50 847.3 0 50 18 40 847.3 0 40 19 37 847.3 0 37 20 79 847.3 0 79 21 67 847.3 0 67 22 54 847.3 0 54 23 40 847.3 0 40 24 58 847.3 0 58 25 37 847.3 0 37 26 44 847.3 0 44 27 36 847.3 0 36 28 54 847.3 0 54 29 43 847.3 0 43 30 47 847.3 0 47 31 48 847.3 0 48 32 41 847.3 0 41 33 32 847.3 0 32 34 105 847.3 0 105 35 76 847.3 0 76 36 72 847.3 0 72 37 58 847.3 0 58 38 43 847.3 0 43 39 56 847.3 0 56 40 58 847.3 0 58 41 58 847.3 0 58 42 47 847.3 0 47 43 85 847.3 0 85 44 127 847.3 0 127 45 60 847.3 0 60 46 329 847.3 0 329 47 256 847.3 0 256 48 651 847.3 0 651 49 107 847.3 0 107 50 67 847.3 0 67 51 50 847.3 0 50 52 52 847.3 0 52 53 56 847.3 0 56 54 221 847.3 0 221 55 148 847.3 0 148 56 151 847.3 0 151 57 38 847.3 0 38 58 56 847.3 0 56 59 64 847.3 0 64 60 38 847.3 0 38 61 39 847.3 0 39 62 38 847.3 0 38 63 44 847.3 0 44 64 35 847.3 0 35 65 57 847.3 0 57 66 47 847.3 0 47 67 67 847.3 0 67 68 141 847.3 0 141 69 86 847.3 0 86 70 90 847.3 0 90 71 84 847.3 0 84 72 98 847.3 0 98 73 70 847.3 0 70 74 76 847.3 0 76 75 48 847.3 0 48 76 45 847.3 0 45 77 56 847.3 0 56 78 50 847.3 0 50 79 57 847.3 0 57 80 44 847.3 0 44 81 69 847.3 0 69 82 67 847.3 0 67 83 65 847.3 0 65 84 86 847.3 0 86 85 67 847.3 0 67 86 45 847.3 0 45 87 97 847.3 0 97 88 112 847.3 0 112 89 82 847.3 0 82 90 157 847.3 0 157 91 134 847.3 0 134 92 108 847.3 0 108 93 95 847.3 0 95 94 136 847.3 0 136 95 170 847.3 0 170 96 159 847.3 0 159 97 98 847.3 0 98 98 78 847.3 0 78 99 97 847.3 0 97 100 77 847.3 0 77 101 55 847.3 0 55 102 67 847.3 0 67 103 106 847.3 0 106 104 694 847.3 0 694 105 1036 847.3 0 1036 106 1919 847.3 0 1919 107 266 847.3 0 266 108 167 847.3 0 167 109 166 847.3 0 166 110 174 847.3 0 174 111 146 847.3 0 146 112 272 847.3 0 272 113 231 847.3 0 231 114 242 847.3 0 242 115 89 847.3 0 89 116 148 847.3 0 148 117 105 847.3 0 105 118 130 847.3 0 130 119 470 847.3 0 470 120 68 847.3 0 68 121 98 847.3 0 98 122 113 847.3 0 113 123 126 847.3 0 126 124 159 847.3 0 159 125 156 847.3 0 156 126 264 847.3 0 264 127 360 847.3 0 360 128 438 847.3 0 438 129 841 847.3 0 841 130 174 847.3 0 174 131 351 847.3 0 351 132 223 847.3 0 223 133 359 847.3 0 359 134 1236 847.3 0 1236 135 706 847.3 0 706 136 593 847.3 0 593 137 192 847.3 0 192 138 289 847.3 0 289 139 577 847.3 0 577 140 512 847.3 0 512 141 1005 847.3 0 1005 142 1290 847.3 0 1290 143 1468 847.3 0 1468 144 2827 847.3 0 2827 145 3754 847.3 0 3754 146 37141 847.3 0 37141 147 39386 847.3 0 39386 148 81108 847.3 0 81108 149 1160 847.3 0 1160 150 569 847.3 0 569 151 730 847.3 0 730 152 742 847.3 0 742 153 1147 847.3 0 1147 154 562 847.3 0 562 155 710 847.3 0 710 156 741 847.3 0 741 157 1076 847.3 0 1076 158 1257 847.3 0 1257 159 2341 847.3 0 2341 160 2746 847.3 0 2746 161 22114 847.3 0 22114 162 33053 847.3 0 33053 163 51868 847.3 0 51868 164 322 847.3 0 322 165 155 847.3 0 155 166 145 847.3 0 145 167 146 847.3 0 146 168 157 847.3 0 157 169 100 847.3 0 100 170 69 847.3 0 69 171 80 847.3 0 80 172 74 847.3 0 74 173 111 847.3 0 111 174 232 847.3 0 232 175 283 847.3 0 283 176 328 847.3 0 328 177 165 847.3 0 165 178 90 847.3 0 90 179 126 847.3 0 126 180 154 847.3 0 154 181 947 847.3 0 947 182 1604 847.3 0 1604 183 678 847.3 0 678 184 389 847.3 0 389 185 116 847.3 0 116 186 150 847.3 0 150 187 186 847.3 0 186 188 165 847.3 0 165 189 119 847.3 0 119 190 107 847.3 0 107 191 96 847.3 0 96 192 108 847.3 0 108 193 112 847.3 0 112 194 136 847.3 0 136 195 211 847.3 0 211 196 96 847.3 0 96 197 93 847.3 0 93 198 110 847.3 0 110 199 128 847.3 0 128 200 140 847.3 0 140 201 137 847.3 0 137 202 121 847.3 0 121 203 100 847.3 0 100 204 106 847.3 0 106 205 111 847.3 0 111 206 113 847.3 0 113 207 118 847.3 0 118 208 96 847.3 0 96 209 109 847.3 0 109 210 69 847.3 0 69 211 96 847.3 0 96 212 77 847.3 0 77 213 125 847.3 0 125 214 170 847.3 0 170 215 169 847.3 0 169 216 165 847.3 0 165 217 120 847.3 0 120 218 140 847.3 0 140 219 160 847.3 0 160 220 197 847.3 0 197 221 154 847.3 0 154 222 155 847.3 0 155 223 105 847.3 0 105 224 89 847.3 0 89 225 102 847.3 0 102 226 114 847.3 0 114 227 139 847.3 0 139 228 133 847.3 0 133 229 138 847.3 0 138 230 168 847.3 0 168 231 198 847.3 0 198 232 219 847.3 0 219 233 176 847.3 0 176 234 156 847.3 0 156 235 127 847.3 0 127 236 167 847.3 0 167 237 164 847.3 0 164 238 204 847.3 0 204 239 335 847.3 0 335 240 898 847.3 0 898 241 1692 847.3 0 1692 242 1755 847.3 0 1755 243 534 847.3 0 534 244 351 847.3 0 351 245 308 847.3 0 308 246 134 847.3 0 134 247 96 847.3 0 96 248 138 847.3 0 138 249 152 847.3 0 152 250 153 847.3 0 153 251 164 847.3 0 164 252 161 847.3 0 161 253 197 847.3 0 197 254 204 847.3 0 204 255 198 847.3 0 198 256 154 847.3 0 154 257 135 847.3 0 135 258 160 847.3 0 160 259 163 847.3 0 163 260 179 847.3 0 179 261 146 847.3 0 146 262 168 847.3 0 168 263 140 847.3 0 140 264 109 847.3 0 109 265 139 847.3 0 139 266 153 847.3 0 153 267 473 847.3 0 473 268 976 847.3 0 976 269 1299 847.3 0 1299 270 867 847.3 0 867 271 292 847.3 0 292 272 294 847.3 0 294 273 275 847.3 0 275 274 317 847.3 0 317 275 407 847.3 0 407 276 393 847.3 0 393 277 565 847.3 0 565 278 830 847.3 0 830 279 960 847.3 0 960 280 657 847.3 0 657 281 462 847.3 0 462 282 394 847.3 0 394 283 362 847.3 0 362 284 220 847.3 0 220 285 139 847.3 0 139 286 143 847.3 0 143 287 156 847.3 0 156 288 271 847.3 0 271 289 233 847.3 0 233 290 232 847.3 0 232 291 166 847.3 0 166 292 204 847.3 0 204 293 201 847.3 0 201 294 330 847.3 0 330 295 295 847.3 0 295 296 307 847.3 0 307 297 164 847.3 0 164 298 111 847.3 0 111 299 94 847.3 0 94 300 119 847.3 0 119 301 149 847.3 0 149 Finished in 22.86 s (59 us/read; 1.02 M reads/minute). === Summary === Total reads processed: 388,520 Reads with adapters: 30,356 (7.8%) Reads that were too short: 29 (0.0%) Reads written (passing filters): 30,327 (7.8%) Total basepairs processed: 68,424,654 bp Total written (filtered): 8,306,090 bp (12.1%) === Adapter 1 === Sequence: GGACTACNNGGGTATCTAAT; Type: regular 5'; Length: 20; Trimmed: 30356 times. No. of allowed errors: 0-4 bp: 0; 5-9 bp: 1; 10-14 bp: 2; 15-19 bp: 3; 20 bp: 4 Overview of removed sequences length count expect max.err error counts 18 13 0.0 3 0 0 11 2 19 361 0.0 3 0 319 30 6 6 20 29540 0.0 4 28498 879 122 29 12 21 82 0.0 4 12 65 3 1 1 22 22 0.0 4 6 0 9 2 5 23 269 0.0 4 238 9 2 19 1 24 1 0.0 4 0 0 0 0 1 26 1 0.0 4 0 0 0 0 1 27 2 0.0 4 0 0 0 1 1 28 26 0.0 4 0 0 0 0 26 36 1 0.0 4 0 0 0 0 1 41 1 0.0 4 0 0 0 0 1 56 4 0.0 4 0 0 0 0 4 61 3 0.0 4 0 0 0 0 3 63 1 0.0 4 0 0 0 0 1 73 1 0.0 4 0 0 0 0 1 77 1 0.0 4 0 1 79 1 0.0 4 0 0 0 0 1 87 1 0.0 4 0 0 0 0 1 90 1 0.0 4 0 0 0 0 1 92 1 0.0 4 0 0 0 0 1 99 1 0.0 4 0 0 0 0 1 107 1 0.0 4 1 108 1 0.0 4 0 0 0 0 1 109 1 0.0 4 0 0 0 1 114 1 0.0 4 0 0 0 0 1 120 1 0.0 4 0 0 0 0 1 127 2 0.0 4 0 0 0 0 2 136 1 0.0 4 0 0 0 0 1 137 1 0.0 4 0 0 0 0 1 147 1 0.0 4 0 0 0 0 1 173 1 0.0 4 0 0 0 0 1 190 1 0.0 4 0 0 0 1 214 1 0.0 4 0 0 0 0 1 216 1 0.0 4 0 0 0 0 1 232 6 0.0 4 0 0 0 0 6 262 1 0.0 4 0 0 0 0 1 264 1 0.0 4 0 0 0 0 1 This is cutadapt 1.11 with Python 2.7.12 Command line parameters: -a CTGSTGCVYCCCRTAGG - Trimming 1 adapter with at most 10.0% errors in single-end mode ... Finished in 1.76 s (58 us/read; 1.03 M reads/minute). === Summary === Total reads processed: 30,327 Reads with adapters: 950 (3.1%) Reads written (passing filters): 30,327 (100.0%) Total basepairs processed: 8,306,090 bp Total written (filtered): 8,283,033 bp (99.7%) === Adapter 1 === Sequence: CTGSTGCVYCCCRTAGG; Type: regular 3'; Length: 17; Trimmed: 950 times. No. of allowed errors: 0-9 bp: 0; 10-17 bp: 1 Bases preceding removed adapters: A: 10.9% C: 21.1% G: 65.1% T: 2.9% none/other: 0.0% Overview of removed sequences length count expect max.err error counts 3 106 473.9 0 106 4 16 118.5 0 16 5 2 29.6 0 2 9 64 0.1 0 5 59 10 40 0.0 1 1 39 11 266 0.0 1 8 258 12 353 0.0 1 13 340 13 5 0.0 1 0 5 15 10 0.0 1 0 10 151 1 0.0 1 1 152 69 0.0 1 46 23 153 8 0.0 1 7 1 210 3 0.0 1 2 1 211 1 0.0 1 1 268 6 0.0 1 6