This is cutadapt 1.11 with Python 2.7.12 Command line parameters: --discard-untrimmed --minimum-length 100 -g CTTGGT -e 0 -O 6 - Trimming 1 adapter with at most 0.0% errors in single-end mode ... This is cutadapt 1.11 with Python 2.7.12 Command line parameters: --discard-untrimmed --minimum-length 100 -g ggactacnngggtatctaat -e 0.2 -O 20 - Trimming 1 adapter with at most 20.0% errors in single-end mode ... Finished in 177.18 s (49 us/read; 1.23 M reads/minute). === Summary === Total reads processed: 3,634,272 Reads with adapters: 286,798 (7.9%) Reads that were too short: 14,126 (0.4%) Reads written (passing filters): 272,672 (7.5%) Total basepairs processed: 1,093,915,872 bp Total written (filtered): 60,928,221 bp (5.6%) === Adapter 1 === Sequence: CTTGGT; Type: regular 5'; Length: 6; Trimmed: 286798 times. No. of allowed errors: 0-6 bp: 0 Overview of removed sequences length count expect max.err error counts 6 2760 887.3 0 2760 7 68230 887.3 0 68230 8 74159 887.3 0 74159 9 148 887.3 0 148 10 107 887.3 0 107 11 80 887.3 0 80 12 107 887.3 0 107 13 79 887.3 0 79 14 95 887.3 0 95 15 88 887.3 0 88 16 78 887.3 0 78 17 74 887.3 0 74 18 96 887.3 0 96 19 147 887.3 0 147 20 173 887.3 0 173 21 179 887.3 0 179 22 95 887.3 0 95 23 110 887.3 0 110 24 76 887.3 0 76 25 87 887.3 0 87 26 124 887.3 0 124 27 91 887.3 0 91 28 71 887.3 0 71 29 104 887.3 0 104 30 111 887.3 0 111 31 96 887.3 0 96 32 83 887.3 0 83 33 82 887.3 0 82 34 95 887.3 0 95 35 99 887.3 0 99 36 114 887.3 0 114 37 101 887.3 0 101 38 146 887.3 0 146 39 125 887.3 0 125 40 119 887.3 0 119 41 84 887.3 0 84 42 101 887.3 0 101 43 87 887.3 0 87 44 104 887.3 0 104 45 119 887.3 0 119 46 99 887.3 0 99 47 108 887.3 0 108 48 103 887.3 0 103 49 102 887.3 0 102 50 84 887.3 0 84 51 89 887.3 0 89 52 92 887.3 0 92 53 97 887.3 0 97 54 84 887.3 0 84 55 86 887.3 0 86 56 90 887.3 0 90 57 134 887.3 0 134 58 123 887.3 0 123 59 106 887.3 0 106 60 106 887.3 0 106 61 119 887.3 0 119 62 102 887.3 0 102 63 72 887.3 0 72 64 97 887.3 0 97 65 95 887.3 0 95 66 104 887.3 0 104 67 100 887.3 0 100 68 80 887.3 0 80 69 115 887.3 0 115 70 95 887.3 0 95 71 113 887.3 0 113 72 88 887.3 0 88 73 103 887.3 0 103 74 90 887.3 0 90 75 108 887.3 0 108 76 190 887.3 0 190 77 257 887.3 0 257 78 171 887.3 0 171 79 110 887.3 0 110 80 127 887.3 0 127 81 92 887.3 0 92 82 108 887.3 0 108 83 89 887.3 0 89 84 107 887.3 0 107 85 83 887.3 0 83 86 84 887.3 0 84 87 126 887.3 0 126 88 99 887.3 0 99 89 86 887.3 0 86 90 83 887.3 0 83 91 121 887.3 0 121 92 114 887.3 0 114 93 401 887.3 0 401 94 456 887.3 0 456 95 296 887.3 0 296 96 358 887.3 0 358 97 338 887.3 0 338 98 204 887.3 0 204 99 90 887.3 0 90 100 101 887.3 0 101 101 93 887.3 0 93 102 67 887.3 0 67 103 80 887.3 0 80 104 77 887.3 0 77 105 160 887.3 0 160 106 86 887.3 0 86 107 160 887.3 0 160 108 78 887.3 0 78 109 76 887.3 0 76 110 88 887.3 0 88 111 65 887.3 0 65 112 91 887.3 0 91 113 95 887.3 0 95 114 80 887.3 0 80 115 101 887.3 0 101 116 94 887.3 0 94 117 109 887.3 0 109 118 73 887.3 0 73 119 65 887.3 0 65 120 59 887.3 0 59 121 51 887.3 0 51 122 93 887.3 0 93 123 101 887.3 0 101 124 74 887.3 0 74 125 110 887.3 0 110 126 83 887.3 0 83 127 98 887.3 0 98 128 92 887.3 0 92 129 197 887.3 0 197 130 692 887.3 0 692 131 615 887.3 0 615 132 525 887.3 0 525 133 151 887.3 0 151 134 176 887.3 0 176 135 173 887.3 0 173 136 122 887.3 0 122 137 160 887.3 0 160 138 140 887.3 0 140 139 92 887.3 0 92 140 134 887.3 0 134 141 129 887.3 0 129 142 350 887.3 0 350 143 891 887.3 0 891 144 2263 887.3 0 2263 145 216 887.3 0 216 146 62 887.3 0 62 147 88 887.3 0 88 148 67 887.3 0 67 149 95 887.3 0 95 150 107 887.3 0 107 151 147 887.3 0 147 152 418 887.3 0 418 153 119 887.3 0 119 154 126 887.3 0 126 155 110 887.3 0 110 156 232 887.3 0 232 157 142 887.3 0 142 158 139 887.3 0 139 159 117 887.3 0 117 160 126 887.3 0 126 161 114 887.3 0 114 162 212 887.3 0 212 163 222 887.3 0 222 164 300 887.3 0 300 165 338 887.3 0 338 166 423 887.3 0 423 167 1306 887.3 0 1306 168 2539 887.3 0 2539 169 53211 887.3 0 53211 170 20393 887.3 0 20393 171 22380 887.3 0 22380 172 227 887.3 0 227 173 112 887.3 0 112 174 173 887.3 0 173 175 78 887.3 0 78 176 378 887.3 0 378 177 62 887.3 0 62 178 116 887.3 0 116 179 93 887.3 0 93 180 95 887.3 0 95 181 94 887.3 0 94 182 81 887.3 0 81 183 58 887.3 0 58 184 93 887.3 0 93 185 102 887.3 0 102 186 92 887.3 0 92 187 59 887.3 0 59 188 59 887.3 0 59 189 90 887.3 0 90 190 69 887.3 0 69 191 83 887.3 0 83 192 147 887.3 0 147 193 256 887.3 0 256 194 170 887.3 0 170 195 66 887.3 0 66 196 72 887.3 0 72 197 66 887.3 0 66 198 86 887.3 0 86 199 62 887.3 0 62 200 95 887.3 0 95 201 81 887.3 0 81 202 109 887.3 0 109 203 114 887.3 0 114 204 110 887.3 0 110 205 116 887.3 0 116 206 104 887.3 0 104 207 71 887.3 0 71 208 80 887.3 0 80 209 64 887.3 0 64 210 80 887.3 0 80 211 76 887.3 0 76 212 70 887.3 0 70 213 71 887.3 0 71 214 77 887.3 0 77 215 91 887.3 0 91 216 92 887.3 0 92 217 88 887.3 0 88 218 81 887.3 0 81 219 68 887.3 0 68 220 57 887.3 0 57 221 243 887.3 0 243 222 249 887.3 0 249 223 150 887.3 0 150 224 888 887.3 0 888 225 97 887.3 0 97 226 88 887.3 0 88 227 81 887.3 0 81 228 100 887.3 0 100 229 85 887.3 0 85 230 134 887.3 0 134 231 188 887.3 0 188 232 113 887.3 0 113 233 87 887.3 0 87 234 81 887.3 0 81 235 114 887.3 0 114 236 166 887.3 0 166 237 341 887.3 0 341 238 257 887.3 0 257 239 94 887.3 0 94 240 100 887.3 0 100 241 85 887.3 0 85 242 106 887.3 0 106 243 80 887.3 0 80 244 60 887.3 0 60 245 81 887.3 0 81 246 101 887.3 0 101 247 88 887.3 0 88 248 66 887.3 0 66 249 79 887.3 0 79 250 71 887.3 0 71 251 74 887.3 0 74 252 74 887.3 0 74 253 163 887.3 0 163 254 119 887.3 0 119 255 117 887.3 0 117 256 80 887.3 0 80 257 73 887.3 0 73 258 75 887.3 0 75 259 75 887.3 0 75 260 74 887.3 0 74 261 98 887.3 0 98 262 157 887.3 0 157 263 197 887.3 0 197 264 122 887.3 0 122 265 68 887.3 0 68 266 95 887.3 0 95 267 86 887.3 0 86 268 82 887.3 0 82 269 107 887.3 0 107 270 132 887.3 0 132 271 559 887.3 0 559 272 1043 887.3 0 1043 273 822 887.3 0 822 274 277 887.3 0 277 275 73 887.3 0 73 276 90 887.3 0 90 277 101 887.3 0 101 278 82 887.3 0 82 279 230 887.3 0 230 280 150 887.3 0 150 281 104 887.3 0 104 282 91 887.3 0 91 283 94 887.3 0 94 284 87 887.3 0 87 285 110 887.3 0 110 286 91 887.3 0 91 287 75 887.3 0 75 288 92 887.3 0 92 289 99 887.3 0 99 290 115 887.3 0 115 291 99 887.3 0 99 292 191 887.3 0 191 293 165 887.3 0 165 294 135 887.3 0 135 295 98 887.3 0 98 296 251 887.3 0 251 297 223 887.3 0 223 298 175 887.3 0 175 299 85 887.3 0 85 300 80 887.3 0 80 301 79 887.3 0 79 Finished in 19.07 s (70 us/read; 0.86 M reads/minute). === Summary === Total reads processed: 272,672 Reads with adapters: 81,530 (29.9%) Reads that were too short: 26 (0.0%) Reads written (passing filters): 81,504 (29.9%) Total basepairs processed: 60,928,221 bp Total written (filtered): 22,187,592 bp (36.4%) === Adapter 1 === Sequence: GGACTACNNGGGTATCTAAT; Type: regular 5'; Length: 20; Trimmed: 81530 times. No. of allowed errors: 0-4 bp: 0; 5-9 bp: 1; 10-14 bp: 2; 15-19 bp: 3; 20 bp: 4 Overview of removed sequences length count expect max.err error counts 17 2 0.0 3 0 0 0 0 2 18 29 0.0 3 0 0 28 1 19 763 0.0 3 0 750 9 3 1 20 78791 0.0 4 77451 1294 40 4 2 21 197 0.0 4 38 152 7 22 18 0.0 4 3 8 5 2 23 1040 0.0 4 977 14 1 45 3 24 7 0.0 4 1 4 0 0 2 26 2 0.0 4 1 1 27 1 0.0 4 0 0 0 1 41 93 0.0 4 0 0 0 0 93 42 3 0.0 4 0 0 0 0 3 44 1 0.0 4 0 0 0 0 1 59 1 0.0 4 0 0 0 1 71 1 0.0 4 1 73 1 0.0 4 1 75 1 0.0 4 0 1 76 3 0.0 4 3 77 5 0.0 4 5 78 1 0.0 4 1 82 1 0.0 4 0 0 0 0 1 87 1 0.0 4 0 0 1 88 2 0.0 4 2 89 1 0.0 4 1 116 1 0.0 4 0 0 0 0 1 124 1 0.0 4 0 0 0 0 1 125 1 0.0 4 0 0 0 0 1 126 6 0.0 4 0 0 0 0 6 127 529 0.0 4 0 0 0 0 529 128 1 0.0 4 0 0 0 0 1 144 1 0.0 4 0 0 0 0 1 149 1 0.0 4 0 0 0 0 1 153 1 0.0 4 0 0 0 0 1 184 4 0.0 4 0 0 0 0 4 196 1 0.0 4 0 0 0 0 1 199 1 0.0 4 0 0 0 0 1 201 1 0.0 4 0 0 0 0 1 225 1 0.0 4 0 0 0 0 1 228 7 0.0 4 0 0 0 0 7 229 1 0.0 4 0 0 0 0 1 234 1 0.0 4 0 0 0 0 1 235 1 0.0 4 0 0 0 1 236 1 0.0 4 0 0 0 0 1 257 1 0.0 4 0 0 0 0 1 282 1 0.0 4 0 0 0 0 1 289 1 0.0 4 0 0 0 0 1 294 1 0.0 4 0 0 0 0 1 This is cutadapt 1.11 with Python 2.7.12 Command line parameters: -a CTGSTGCVYCCCRTAGG - Trimming 1 adapter with at most 10.0% errors in single-end mode ... Finished in 4.78 s (59 us/read; 1.02 M reads/minute). === Summary === Total reads processed: 81,504 Reads with adapters: 6,839 (8.4%) Reads written (passing filters): 81,504 (100.0%) Total basepairs processed: 22,187,592 bp Total written (filtered): 21,864,447 bp (98.5%) === Adapter 1 === Sequence: CTGSTGCVYCCCRTAGG; Type: regular 3'; Length: 17; Trimmed: 6839 times. No. of allowed errors: 0-9 bp: 0; 10-17 bp: 1 Bases preceding removed adapters: A: 5.1% C: 8.4% G: 82.5% T: 3.9% none/other: 0.0% WARNING: The adapter is preceded by "G" extremely often. The provided adapter sequence may be incomplete. To fix the problem, add "G" to the beginning of the adapter sequence. Overview of removed sequences length count expect max.err error counts 3 47 1273.5 0 47 4 23 318.4 0 23 5 6 79.6 0 6 6 1 19.9 0 1 8 2 1.2 0 2 9 86 0.3 0 1 85 10 690 0.1 1 20 670 11 4998 0.0 1 28 4970 12 11 0.0 1 0 11 87 1 0.0 1 1 107 1 0.0 1 1 150 1 0.0 1 0 1 151 5 0.0 1 0 5 152 2 0.0 1 0 2 208 1 0.0 1 0 1 258 1 0.0 1 1 259 183 0.0 1 169 14 260 15 0.0 1 12 3 261 5 0.0 1 5 266 1 0.0 1 1 270 378 0.0 1 346 32 271 355 0.0 1 331 24 272 24 0.0 1 21 3 273 2 0.0 1 2 WARNING: One or more of your adapter sequences may be incomplete. Please see the detailed output above.